@ohajek
Nov 13 11:30:21 xen03 kernel: [10188.720655] AMD IOMMUv2 driver by Joerg Roedel jroedel@suse.de
Nov 13 11:30:21 xen03 kernel: [10188.720656] AMD IOMMUv2 functionality not available on this system
This is expected, Dom0 Kernel (Linux) is not supposed to access the IOMMU when it is already used by Xen. To check if AMD-Vi is working, you need to check xl dmesg
instead.
I took a quick look at kern_gim_compiled.txt, and it look likes it timed-out somewhere
Oct 23 20:49:32 xen03 kernel: [ 80.657394] gim error:(wait_cmd_complete:2387) wait_cmd_complete -- time out after 0.003004460 sec
Oct 23 20:49:32 xen03 kernel: [ 80.657408] gim error:(wait_cmd_complete:2390) Cmd = 0x17, Status = 0x0, cmd_Complete=0
3ms looks like a short timeout for me, but aside that, it looks like a driver(gim) or hardware issue