libfuse.so: error adding symbols: File in wrong format

mavoff

It continues with errors.

# npm install --force
npm WARN using --force Recommended protections disabled.

up to date, audited 3281 packages in 10s

213 packages are looking for funding
  run `npm fund` for details

63 vulnerabilities (5 low, 8 moderate, 46 high, 4 critical)

To address issues that do not require attention, run:
  npm audit fix

To address all issues possible (including breaking changes), run:
  npm audit fix --force

Some issues need review, and may require choosing
a different dependency.

Run `npm audit` for details.
[root@xo-admin xen-orchestra]# yarn
yarn install v1.22.19
warning package-lock.json found. Your project contains lock files generated by tools other than Yarn. It is advised not to mix package managers in order to avoid resolution inconsistencies caused by unsynchronized lock files. To clear this warning, remove package-lock.json.
[1/5] Validating package.json...
[2/5] Resolving packages...
warning vuepress > @vuepress/core > chokidar > fsevents@1.2.13: fsevents 1 will break on node v14+ and could be using insecure binaries. Upgrade to fsevents 2.
warning Lockfile has incorrect entry for "styled-components@^3.1.5". Ignoring it.
warning workspace-aggregator-3a0c2cd3-09f2-49f2-8671-cef32d51497f > xo-web > gulp-watch > chokidar > fsevents@1.2.13: fsevents 1 will break on node v14+ and could be using insecure binaries. Upgrade to fsevents 2.
[3/5] Fetching packages...
[4/5] Linking dependencies...
warning "workspace-aggregator-3a0c2cd3-09f2-49f2-8671-cef32d51497f > @xen-orchestra/fs > @aws-sdk/lib-storage@3.72.0" has unmet peer dependency "@aws-sdk/abort-controller@^3.0.0".
warning "workspace-aggregator-3a0c2cd3-09f2-49f2-8671-cef32d51497f > xo-web > enzyme-adapter-react-15@1.4.3" has incorrect peer dependency "react@^15.5.0".
warning "workspace-aggregator-3a0c2cd3-09f2-49f2-8671-cef32d51497f > xo-web > enzyme-adapter-react-15@1.4.3" has incorrect peer dependency "react-dom@^15.5.0".
warning "workspace-aggregator-3a0c2cd3-09f2-49f2-8671-cef32d51497f > xo-web > enzyme-adapter-react-15@1.4.3" has incorrect peer dependency "react-test-renderer@^15.5.0".
warning "workspace-aggregator-3a0c2cd3-09f2-49f2-8671-cef32d51497f > xo-web > react-addons-test-utils@15.6.2" has incorrect peer dependency "react-dom@^15.4.2".
warning "workspace-aggregator-3a0c2cd3-09f2-49f2-8671-cef32d51497f > xo-web > react-dom@18.2.0" has incorrect peer dependency "react@^18.2.0".
warning "workspace-aggregator-3a0c2cd3-09f2-49f2-8671-cef32d51497f > xo-web > react-select@1.3.0" has incorrect peer dependency "react-dom@^0.14.9 || ^15.3.0 || ^16.0.0-rc || ^16.0".
warning "workspace-aggregator-3a0c2cd3-09f2-49f2-8671-cef32d51497f > xo-web > react-shortcuts@2.1.0" has incorrect peer dependency "react-dom@^0.14.8 || ^15 || ^16".
warning "workspace-aggregator-3a0c2cd3-09f2-49f2-8671-cef32d51497f > xo-web > react-test-renderer@18.2.0" has incorrect peer dependency "react@^18.2.0".
warning "workspace-aggregator-3a0c2cd3-09f2-49f2-8671-cef32d51497f > xo-web > react-virtualized@9.22.3" has incorrect peer dependency "react-dom@^15.3.0 || ^16.0.0-alpha".
warning "workspace-aggregator-3a0c2cd3-09f2-49f2-8671-cef32d51497f > xo-web > uncontrollable-input@0.1.1" has incorrect peer dependency "react@>=15.4.2".
warning "workspace-aggregator-3a0c2cd3-09f2-49f2-8671-cef32d51497f > xo-web > react-test-renderer > react-shallow-renderer@16.15.0" has incorrect peer dependency "react@^16.0.0 || ^17.0.0 || ^18.0.0".
warning Workspaces can only be enabled in private projects.
[5/5] Building fresh packages...
[9/11] ⡀ es5-ext
[8/11] ⡀ vuepress
[6/11] ⡀ argon2
[7/11] ⡀ leveldown
warning Error running install script for optional dependency: "/opt/xen-orchestra/node_modules/fuse-native: Command failed.
Exit code: 1
Command: node-gyp-build
Arguments: 
Directory: /opt/xen-orchestra/node_modules/fuse-native
Output:
gyp info it worked if it ends with ok
gyp info using node-gyp@9.0.0
gyp info using node@16.13.0 | linux | arm64
gyp info find Python using Python version 3.6.8 found at \"/usr/bin/python3\"
gyp info spawn /usr/bin/python3
gyp info spawn args [
gyp info spawn args   '/usr/local/lib/node_modules/npm/node_modules/node-gyp/gyp/gyp_main.py',
gyp info spawn args   'binding.gyp',
gyp info spawn args   '-f',
gyp info spawn args   'make',
gyp info spawn args   '-I',
gyp info spawn args   '/opt/xen-orchestra/node_modules/fuse-native/build/config.gypi',
gyp info spawn args   '-I',
gyp info spawn args   '/usr/local/lib/node_modules/npm/node_modules/node-gyp/addon.gypi',
gyp info spawn args   '-I',
gyp info spawn args   '/root/.cache/node-gyp/16.13.0/include/node/common.gypi',
gyp info spawn args   '-Dlibrary=shared_library',
gyp info spawn args   '-Dvisibility=default',
gyp info spawn args   '-Dnode_root_dir=/root/.cache/node-gyp/16.13.0',
gyp info spawn args   '-Dnode_gyp_dir=/usr/local/lib/node_modules/npm/node_modules/node-gyp',
gyp info spawn args   '-Dnode_lib_file=/root/.cache/node-gyp/16.13.0/<(target_arch)/node.lib',
gyp info spawn args   '-Dmodule_root_dir=/opt/xen-orchestra/node_modules/fuse-native',
gyp info spawn args   '-Dnode_engine=v8',
gyp info spawn args   '--depth=.',
gyp info spawn args   '--no-parallel',
gyp info spawn args   '--generator-output',
gyp info spawn args   'build',
gyp info spawn args   '-Goutput_dir=.'
gyp info spawn args ]
gyp info spawn make
gyp info spawn args [ 'BUILDTYPE=Release', '-C', 'build' ]
make: Entering directory '/opt/xen-orchestra/node_modules/fuse-native/build'
  CC(target) Release/obj.target/fuse/fuse-native.o
  SOLINK_MODULE(target) Release/obj.target/fuse.node
make: Leaving directory '/opt/xen-orchestra/node_modules/fuse-native/build'
/opt/xen-orchestra/node_modules/fuse-shared-library-linux/libfuse/lib/libfuse.so: error adding symbols: File in wrong format
collect2: error: ld returned 1 exit status
make: *** [fuse.target.mk:146: Release/obj.target/fuse.node] Error 1
gyp ERR! build error 
gyp ERR! stack Error: `make` failed with exit code: 2
gyp ERR! stack     at ChildProcess.onExit (/usr/local/lib/node_modules/npm/node_modules/node-gyp/lib/build.js:194:23)
gyp ERR! stack     at ChildProcess.emit (node:events:390:28)
gyp ERR! stack     at Process.ChildProcess._handle.onexit (node:internal/child_process:290:12)
gyp ERR! System Linux 5.4.17-2136.307.3.1.el8uek.aarch64
gyp ERR! command \"/usr/local/bin/node\" \"/usr/local/lib/node_modules/npm/node_modules/node-gyp/bin/node-gyp.js\" \"rebuild\"
gyp ERR! cwd /opt/xen-orchestra/node_modules/fuse-native
success Saved lockfile.
Done in 64.63s.
[root@xo-admin xen-orchestra]#

Do you want me to erase this instance and do the install from source from scratch?

julien-f

@maverick

Do not run yarn, it is replaced by npm i
Start with --legacy-peer-deps, only if it does not work try --force
If it still does not work, yes please, retry from scratch.

mavoff

@julien-f hi there,

I'm sorry for my delay but was a bit overwhelmed with other tasks.

So running only npm i now gives me the following output:

# git checkout .
Updated 13 paths from the index

# git branch
* fix_fuse_dependancy_arm
  master

# git pull --ff-only
remote: Enumerating objects: 79, done.
remote: Counting objects: 100% (73/73), done.
remote: Compressing objects: 100% (41/41), done.
remote: Total 79 (delta 36), reused 61 (delta 30), pack-reused 6
Unpacking objects: 100% (79/79), 87.43 KiB | 3.01 MiB/s, done.
From https://github.com/vatesfr/xen-orchestra
   f1ab62524..3d3b63a59  master     -> origin/master
 + 2378c0882...2d9a44c6e tasks      -> origin/tasks  (forced update)
Already up to date.

# npm i
npm WARN deprecated modular-cssify@12.1.3: Renamed to @modular-css/browserify
npm WARN deprecated modular-css-core@12.1.3: Renamed to @modular-css/processor
npm WARN deprecated chokidar@2.1.8: Chokidar 2 does not receive security updates since 2019. Upgrade to chokidar 3 with 15x fewer dependencies
npm WARN deprecated core-js@2.6.12: core-js@<3.23.3 is no longer maintained and not recommended for usage due to the number of issues. Because of the V8 engine whims, feature detection in old core-js versions could cause a slowdown up to 100x even if nothing is polyfilled. Some versions have web compatibility issues. Please, upgrade your dependencies to the actual version of core-js.

added 267 packages, removed 204 packages, changed 54 packages, and audited 3280 packages in 37s

209 packages are looking for funding
  run `npm fund` for details

70 vulnerabilities (5 low, 13 moderate, 49 high, 3 critical)

To address issues that do not require attention, run:
  npm audit fix

To address all issues possible (including breaking changes), run:
  npm audit fix --force

Some issues need review, and may require choosing
a different dependency.

Run `npm audit` for details.
#

This seems to throw a lot of warnings but no fatal errors, do you confirm? Also it's not suggesting to use the --legacy-peer-deps flag.

After using these commands and rebooting the host, XO is stopped.
Is npm i the same as yarn; yarn build ? Thank you!

edit: when I get an hour I'll redo from scratch to see how that goes.

Ezka

Hi, as I'm facing the same issue for the arm64 docker, I've build it in qemu with your fix_fuse_dependancy_arm branch and it works for me.

julien-f

@maverick npm i replace yarn, not yarn build.

mavoff

@julien-f so i should issue yarn build after doing npm i gotcha. Give me a couple minutes will update you in an instant.

mavoff

after building when I open XO on the browser I only get an error saying

Cannot GET /

I'll have to redo from source. Give me a couple of days please I've been a bit overwhelmed these last days

julien-f

@maverick No hurries, we have a lot on our plates too.

mavoff

@julien-f thanks. in the meanwhile let me ask @Ezka when you rebuilt did you use npm i instead of yarn or just the plain old yard command?

Ezka

@maverick

I've use something like :

npm install && npm run build

and in doubt I've rebuild with:

npm install && yarn build

both work, no surprises here.

Note that the npm install step on arm64 takes ages in comparison to the x86_64 arch. It was already slow with yarn, but npm is a pain. I've try to build it on Github infra to release a multiarch docker but it reaches the max execution time

tamas

I am also affected by this error message and now, according to the suggestions posted here, I had been able to build the version. However, now when I want to start the xo-server, I get the following message:

# /usr/local/bin/node ./dist/cli.mjs
node:internal/modules/cjs/loader:985
  const err = new Error(message);
              ^

Error: Cannot find module 'strnum'
Require stack:
- /opt/xen-orchestra/packages/xo-server/node_modules/fast-xml-parser/src/xmlparser/OrderedObjParser.js
- /opt/xen-orchestra/packages/xo-server/node_modules/fast-xml-parser/src/xmlparser/XMLParser.js
- /opt/xen-orchestra/packages/xo-server/node_modules/fast-xml-parser/src/fxp.js
    at Function.Module._resolveFilename (node:internal/modules/cjs/loader:985:15)
    at Function.Module._load (node:internal/modules/cjs/loader:833:27)
    at Module.require (node:internal/modules/cjs/loader:1057:19)
    at require (node:internal/modules/cjs/helpers:103:18)
    at Object.<anonymous> (/opt/xen-orchestra/packages/xo-server/node_modules/fast-xml-parser/src/xmlparser/OrderedObjParser.js:7:18)
    at Module._compile (node:internal/modules/cjs/loader:1155:14)
    at Object.Module._extensions..js (node:internal/modules/cjs/loader:1209:10)
    at Module.load (node:internal/modules/cjs/loader:1033:32)
    at Function.Module._load (node:internal/modules/cjs/loader:868:12)
    at Module.require (node:internal/modules/cjs/loader:1057:19)
    at require (node:internal/modules/cjs/helpers:103:18)
    at Object.<anonymous> (/opt/xen-orchestra/packages/xo-server/node_modules/fast-xml-parser/src/xmlparser/XMLParser.js:2:26)
    at Module._compile (node:internal/modules/cjs/loader:1155:14)
    at Object.Module._extensions..js (node:internal/modules/cjs/loader:1209:10)
    at Module.load (node:internal/modules/cjs/loader:1033:32)
    at Function.Module._load (node:internal/modules/cjs/loader:868:12) {
  code: 'MODULE_NOT_FOUND',
  requireStack: [
    '/opt/xen-orchestra/packages/xo-server/node_modules/fast-xml-parser/src/xmlparser/OrderedObjParser.js',
    '/opt/xen-orchestra/packages/xo-server/node_modules/fast-xml-parser/src/xmlparser/XMLParser.js',
    '/opt/xen-orchestra/packages/xo-server/node_modules/fast-xml-parser/src/fxp.js'
  ]
}

What can I do here to get the interface working again?

TIA

florent

@tamas said in libfuse.so: error adding symbols: File in wrong format:

fast-xml-parser

fast-xml-parser is an older deps (last change is at least a few months old). Do you know which is the last working version on your system ?

tamas

@florent said in libfuse.so: error adding symbols: File in wrong format:

@tamas said in libfuse.so: error adding symbols: File in wrong format:

fast-xml-parser

fast-xml-parser is an older deps (last change is at least a few months old). Do you know which is the last working version on your system ?

Unglücklicherweise weiß ich das nicht. Die funktionierende Version hatte ich vor circa 3 Monaten installiert.

Mark C

@florent said in libfuse.so: error adding symbols: File in wrong format:

@maverick using system li b will add a tight dependency, it will be harder to make it work on exotic systems

I pushed a new patch on the same branch, can you tell me if it solves the problem ?

Hi @florent,

I know this is an old topic, but I was looking to build XO on ARM64 recently and I ran across the issue that the node fuse-native package doesn't support arm64 and appears to be abandoned, and your branch with making it an optional dependancy. Thanks!

However, digging a bit more, I found https://github.com/sagemathinc/fuse-native which looks to be a very recent derivation of the published fuse-native module that has been adjusted to use system libraries on the build host rather than binaries bundled into the module.

Reworking this fix to use this alternative might give working fuse support on ARM64.

What do you think? I guess in terms of the non-ARM64 builds, it is a risk/new dependancy to use the system's fuse libraries but maybe a better approach long term as the libfuse.so in fuse-friends is increasingly old and lacking in updates.

Mark

olivierlambert

Sounds like a good idea However, I don't think our current XOAs are shipped with fuse libs directly, so that might break for our XOA users

At least we can take a look to test it!

Mark C

@olivierlambert - thanks for getting back on this.

My limited testing so far was to substitute the alternate fuse-native module. ( There's probably a better way to do this but I didn't really want to fork the repo for some quick tests! )

Make a build folder, then git clone https://github.com/sagemathinc/fuse-native
Edit the sagemathinc package.json so that the name and version match the fuse-friends version (to avoid having to adjust any of the xen-orchestra files directly)
git clone https://github.com/vatesfr/xen-orchestra.git
copy the modified fuse-native folder into the xen-orchestra folder
Run 'yarn link' in xen-orchestra/fuse-native folder to tell yarn to use this local module instead of the fuse-friends version
Run 'yarn link fuse-native' in the xen-orchestra folder to have the xen-orchestra build use the local version
Run yarn and yarn build as per the build-from-source page

I got a version of xo-server built from current master, and it started up. I haven't done anything with it yet beyond the initial smoke-test.

Wrinkles - I needed to add pkg-config to the debian 12 build and host VM as sagemathinc's fuse-native module uses that to locate the system libfuse libraries. So if you're looking at the XOA side, then pkg-config would be a new build dependancy in addition to the host's libfuse libraries.

Sincerely,

Mark

xo-server 5.120.2 / xo-web 5.122.2 / commit 3baa378

olivierlambert

It's not a problem per se to add a new package in XOA, it's just that we can't do that for all existing/running XOAs for our existing customers. So we can't afford to break it. What we usually do, is to regen a new XOA from time to time (a fresh one is coming in September) on Debian 12.

I'll check to see if we can add a package for fuse, but this won't solve it for our existing users

florent

@Mark-C I can't test easily for now, but I think there may be an easier path after reviewing your solution

fuse-native use fuse-shared-library 1.0.2
from version 1.1 , fuse-shared-library should support ARM , maybe it is possible to bump it in the dependencies of fuse-native ?

This way , it should still work without libfuse on the system, but also build it on arm

Mark C

@florent said in libfuse.so: error adding symbols: File in wrong format:

@Mark-C I can't test easily for now, but I think there may be an easier path after reviewing your solution

fuse-native use fuse-shared-library 1.0.2
from version 1.1 , fuse-shared-library should support ARM , maybe it is possible to bump it in the dependencies of fuse-native ?

This way , it should still work without libfuse on the system, but also build it on arm

Hi @florent ,

I am building on aarch64 / ARM64 rather than just arm.

I did look at fuse-shared-library-linux-arm library - the embedded libfuse.so in that is a 32 bit version rather than 64 bit from what I could see:

root@xo-aarch64:/home/xo/xoi/xo-builds/xen-orchestra-202308250931/node_modules/fuse-shared-library-linux-arm/libfuse/lib# file libfuse.so
libfuse.so: ELF 32-bit LSB shared object, ARM, EABI5 version 1 (SYSV), dynamically linked, BuildID[sha1]=6ed4a4b321ab69af9aeef3db322ba67396f4d52b, stripped

That's in contrast to the system library:

/usr/lib/aarch64-linux-gnu/libfuse.so: ELF 64-bit LSB shared object, ARM aarch64, version 1 (SYSV), dynamically linked, BuildID[sha1]=29ce785f4418d869ead1b31501c4a82446de0cfe, stripped

@olivierlambert - I do appreciate the support issue for existing platforms and users. This is very much me looking at using a turing pi 2 as a low power setup in my home lab and I appreciate it is a niche case.

The more supportable fix would be to add ARM64 support into the fuse-friends version of fuse-native, but it seems that node's current policies don't allow adoption of orphaned/abandoned modules to avoid supply-chain attacks. [ https://docs.npmjs.com/policies/disputes - When not to use this process ].

mavoff

Looking for a long term fix. Thanks.