Thanks for following up and opening the issue; that's exactly the kind of report the team needs. I've subscribed to it, so I'll see when it moves. The second-run failure pattern is a useful clue; hopefully they can reproduce it from there. 
Posts
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RE: Error while scanning disk
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RE: XOA Unable to connect xo server every 30s
Good news, or at least, that's my understanding.

This was a known bug and it's fixed in XO 6.4 (released April 29, PR #9681). Upgrading should make those alerts disappear for good. Thanks for the video, it made the report unambiguous.