I checked my hosts and the clocks all seem to be very close in time, certainly within a second of each other. The one difference is that the host that is often the target for the backups is set to UTC and the other two are set to MST. Clearly an oversight on my part, unless it is purely a display issue. When I ssh into dom0 and use date, those two show MST and the other shows UTC. If that has ever changed, it would most likely have been in the upgrade from 8.2 to 8.3, which I performed on Jan 28.
All that said, this body timeout issue happens to me every day on random VMs within my backup. Occasionally a backup will complete with none of these errors on any VM but that's uncommon. All of the failed backups are from VMs or configs on the two MST hosts and are stored on the UTC host. (To be clear, they are also stored elsewhere.) I also have an XO instance on one of the MST hosts that performs delta backups and those have never failed. I don't know if that's because they are delta or if it's because they don't touch the UTC host.
The recent failed backups started on 6/26 for my VM full backups and on 6/29 for the config backups. Prior to that the config backups had never had a problem and the full backups had been fine back into February. From February 21 to March 12, I had a smattering of backup failures due to body timeout error for the full backups.