An issue was identified in backup jobs running in incremental with commit 100f113 or release 6.5.0. If one of your incremental backup chains was corrupted, it lead to a cleaning of vdis folder resulting into backup lose.
Please update your source at least to 4552fb9 or your XOA to 6.5.1.
If you encountered issues about a warning with aliases, you are concerned. You need to run your backup jobs again to have your backups back on track.